Identification and analysis of immune-related transcriptome in Asian seabass Lates calcarifer
نویسندگان
چکیده
منابع مشابه
Analysis of Stress-Responsive Transcriptome in the Intestine of Asian Seabass (Lates calcarifer) using RNA-Seq
Identification of differentially expressed genes (DEGs) and regulated pathways in response to stressors using a whole-genome approach is critical to understanding the mechanisms underlying stress responses. We challenged Asian seabass with lipopolysaccharide (LPS), Vibrio harveyi, high salinity and fasting, and sequenced six cDNA libraries of intestine samples using Roche 454 RNA-seq. Over 1 mi...
متن کاملPrimary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome
As part of our Asian seabass genome project, we are generating an inventory of repeat elements in the genome and transcriptome. The karyotype showed a diploid number of 2n = 24 chromosomes with a variable number of B-chromosomes. The transcriptome and genome of Asian seabass were searched for repetitive elements with experimental and bioinformatics tools. Six different types of repeats constitu...
متن کاملIdentification and Characterization of 63 MicroRNAs in the Asian Seabass Lates calcarifer
BACKGROUND MicroRNAs (miRNAs) play an important role in the regulation of many fundamental biological processes. So far miRNAs have been only identified in a few fish species, although there are over 30,000 fish species living under different environmental conditions on the earth. Here, we described an approach to identify conserved miRNAs and characterized their expression patterns in differen...
متن کاملAsian sea bass, Lates calcarifer
Lates calcarifer, commonly known as the Asian sea bass or barramundi, is an 16 interesting species that has great aquaculture potential in Asia including Malaysia and also 17 Australia. We have investigated essential fatty acid metabolism in this species, focusing on 18 the endogenous highly unsaturated fatty acid (HUFA) synthesis pathway using both 19 biochemical and molecular biological appro...
متن کاملEvaluation of potential Asian seabass (Lates calcarifer) culture in ponds of Choebde, Abadan
Asian seabass (Lates calcarifer) is a potential candidate species for rearing in pond system in Iran because of its fast growth rate, ability to adapt to varying environmental conditions and its demand in domestic as well as export markets. Hence, growth parameters, survival and body composition of Asian seabass (20.70±0.36 g) was investigated. Experiment was conducted in three ponds In Choebde...
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ژورنال
عنوان ژورنال: BMC Genomics
سال: 2010
ISSN: 1471-2164
DOI: 10.1186/1471-2164-11-356